SED-ML URNs

Language URNs

The following languages have to our knowledge so far been used with SED-ML. To specify the language of a model in the Model class, please use the according URN given. The general scheme for a language URN in SED-ML is urn:sedml:language:language name and version.

Language URN Specification URL
CellML (generic) urn:sedml:language:cellml
CellML 1.0 urn:sedml:language:cellml.1_0 http://www.cellml.org/specifications/cellml_1.0
CellML 1.1 urn:sedml:language:cellml.1_1
NeuroML (generic) urn:sedml:language:neuroml
NeuroML Version 1.8.1 Level 1 urn:sedml:language:neuroml.version-1_8_1.level-1
NeuroML Version 1.8.1 Level 2 urn:sedml:language:neuroml.version-1_8_1.level-2
SBML (generic) urn:sedml:language:sbml
SBML Level 1 Version 1 urn:sedml:language:sbml.level-1.version-1 http://sbml.org/Special/specifications/sbml-level-1/version-1/html/
SBML Level 1 Version 2 urn:sedml:language:sbml.level-1.version-2 http://sbml.org/Special/specifications/sbml-level-1/version-2/html/
SBML Level 2 Version 1 urn:sedml:language:sbml.level-2.version-1 http://www.sbml.org/specifications/sbml-level-2/version-1/html/
SBML Level 2 Version 2 urn:sedml:language:sbml.level-2.version-2 http://www.sbml.org/specifications/sbml-level-2/version-2/revision-1/sbml-level-2-version-2-rev1.pdf
SBML Level 2 Version 3 urn:sedml:language:sbml.level-2.version-3 http://www.sbml.org/specifications/sbml-level-2/version-3/release-1/sbml-level-2-version-3-rel-1.pdf
SBML Level 2 Version 4 urn:sedml:language:sbml.level-2.version-4 http://precedings.nature.com/documents/2715/version/1
SBML Level 2 Version 5 urn:sedml:language:sbml.level-2.version-5 http://co.mbine.org/specifications/sbml.level-2.version-5.release-1
SBML Level 3 Version 1 urn:sedml:language:sbml.level-3.version-1 http://precedings.nature.com/documents/4123/version/1
SBML Level 3 Version 2 urn:sedml:language:sbml.level-3.version-2 http://sbml.org/Special/specifications/sbml-level-3/version-2/core/release-1-rc2/sbml-level-3-version-2-core.pdf
VCML (generic) urn:sedml:language:vcml

Data Format URNs

To specify the format of a resource please use the according URN given. The general scheme for a format URN in SED-ML is urn:sedml:format:format name.

Data Format URN
NuML (generic) urn:sedml:format:numl
NuML Level 1 Version 1 urn:sedml:format:numl.level-1.version-1
CSV urn:sedml:format:csv
TSV urn:sedml:format:tsv

Predefined Symbols

As described in the SED-ML specification some modeling languages use predefined symbols or implicit variables. In order to handle such variables the SED-ML introduced symbol URNs. The general scheme for a symbol URN in SED-ML is urn:sedml:symbol:symbolName.

Language URN Definition
SBML urn:sedml:symbol:time Time in SBML is an intrinsic model variable that is addressable in model equations via a csymbol 'time'.

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